Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure

Weyland, Mathias; Thumser-Henner, Pauline; Rohrer Bley, Carla; Ulzega, Simone; Petri-Fink, Alke; Lattuada, Marco; Scheidegger, Stephan; Füchslin, Rudolf Marcel

Publication type:	Conference other
Type of review:	Peer review (abstract)
Title:	Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure
Authors:	Weyland, Mathias Thumser-Henner, Pauline Rohrer Bley, Carla Ulzega, Simone Petri-Fink, Alke Lattuada, Marco Scheidegger, Stephan Füchslin, Rudolf Marcel
Conference details:	XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018
Issue Date:	2018
Language:	English
Subject (DDC):	572: Biochemistry
Abstract:	In this work, a method is presented to map a set of experimentally obtained, time-resolved distributions to a dynamic model. Specifically, time-resolved comet assay readouts of cancer cells after application of ionizing radiation are mapped to the Multi-Hit-Repair model, a radiobiologically motivated dynamic model used to predict DNA damage and repair. Differential evolution is used for parameter-search to showcase the potential of this method, producing a prediction close to the experimental measurement. The results obtained from the parameter search are used to characterize aspects of the repair process. The method is compared to prior attempts of finding model parameters from dose-response curves, revealing that calibration is required to render the two comparable.
Further description:	Oral presentation
URI:	https://digitalcollection.zhaw.ch/handle/11475/14623
Fulltext version:	Published version
License (according to publishing contract):	Licence according to publishing contract
Departement:	Life Sciences and Facility Management
Organisational Unit:	Institute of Computational Life Sciences (ICLS)
Published as part of the ZHAW project:	Phantom- and Model-based Optimisation of Medical Imaging Modalities
Appears in collections:	Publikationen Life Sciences und Facility Management

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Weyland, M., Thumser-Henner, P., Rohrer Bley, C., Ulzega, S., Petri-Fink, A., Lattuada, M., Scheidegger, S., & Füchslin, R. M. (2018). Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure. XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018.

Weyland, M. et al. (2018) ‘Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure’, in XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018.

M. Weyland et al., “Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure,” in XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018, 2018.

WEYLAND, Mathias, Pauline THUMSER-HENNER, Carla ROHRER BLEY, Simone ULZEGA, Alke PETRI-FINK, Marco LATTUADA, Stephan SCHEIDEGGER und Rudolf Marcel FÜCHSLIN, 2018. Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure. In: XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018. Conference presentation. 2018

Weyland, Mathias, Pauline Thumser-Henner, Carla Rohrer Bley, Simone Ulzega, Alke Petri-Fink, Marco Lattuada, Stephan Scheidegger, and Rudolf Marcel Füchslin. 2018. “Dynamic DNA Damage and Repair Modeling : Bridging the Gap between Experimental Damage Readout and Model Structure.” Conference presentation. In XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018.

Weyland, Mathias, et al. “Dynamic DNA Damage and Repair Modeling : Bridging the Gap between Experimental Damage Readout and Model Structure.” XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018, 2018.