Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T

Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H.M.

doi:10.3390/d11110204

Please use this identifier to cite or link to this item: https://doi.org/10.21256/zhaw-18626

Publication type:	Article in scientific journal
Type of review:	Peer review (publication)
Title:	Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T
Authors:	Rutz, Dominik Frasson, David Sievers, Martin Blom, Jochen Rezzonico, Fabio Pothier, Joël F. Smits, Theo H.M.
et. al:	No
DOI:	10.3390/d11110204 10.21256/zhaw-18626
Published in:	Diversity
Volume(Issue):	2019
Issue:	11
Page(s):	204
Issue Date:	2019
Publisher / Ed. Institution:	MDPI
ISSN:	1424-2818
Language:	English
Subjects:	Biotechnological application; Ecology; Aromatic degradation; Secondary metabolites; Secretion systems; Biocontrol; Zeaxanthin
Subject (DDC):	572: Biochemistry 660.6: Biotechnology
Abstract:	In recent years, the use of whole-cell biocatalysts and biocatalytic enzymes in biotechnological applications originating from the genus Pseudomonas has greatly increased. In 2014, two new species within the Pseudomonas putida group were isolated from Swiss forest soil. In this study, the high quality draft genome sequences of Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T were used in a comparative genomics approach to identify genomic features that either di ered between these two new species or to selected members of the P. putida group. The genomes of P. wadenswilerensis CCOS 864T and P. reidholzensis CCOS 865T were found to share genomic features for the degradation of aromatic compounds or the synthesis of secondary metabolites. In particular, genes encoding for biocatalytic relevant enzymes belonging to the class of oxidoreductases, proteases and isomerases were found, that could yield potential applications in biotechnology. Ecologically relevant features revealed that both species are probably playing an important role in the degradation of soil organic material, the accumulation of phosphate and biocontrol against plant pathogens.
URI:	https://digitalcollection.zhaw.ch/handle/11475/18626
Fulltext version:	Published version
License (according to publishing contract):	CC BY 4.0: Attribution 4.0 International
Departement:	Life Sciences and Facility Management
Organisational Unit:	Institute of Chemistry and Biotechnology (ICBT) Institute of Natural Resource Sciences (IUNR)
Appears in collections:	Publikationen Life Sciences und Facility Management

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Rutz, D., Frasson, D., Sievers, M., Blom, J., Rezzonico, F., Pothier, J. F., & Smits, T. H. M. (2019). Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T. Diversity, 2019(11), 204. https://doi.org/10.3390/d11110204

Rutz, D. et al. (2019) ‘Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T’, Diversity, 2019(11), p. 204. Available at: https://doi.org/10.3390/d11110204.

D. Rutz et al., “Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T,” Diversity, vol. 2019, no. 11, p. 204, 2019, doi: 10.3390/d11110204.

RUTZ, Dominik, David FRASSON, Martin SIEVERS, Jochen BLOM, Fabio REZZONICO, Joël F. POTHIER und Theo H.M. SMITS, 2019. Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T. Diversity. 2019. Bd. 2019, Nr. 11, S. 204. DOI 10.3390/d11110204

Rutz, Dominik, David Frasson, Martin Sievers, Jochen Blom, Fabio Rezzonico, Joël F. Pothier, and Theo H.M. Smits. 2019. “Comparative Genomic Analysis of the Biotechnological Potential of the Novel Species Pseudomonas Wadenswilerensis CCOS 864T and Pseudomonas Reidholzensis CCOS 865T.” Diversity 2019 (11): 204. https://doi.org/10.3390/d11110204.

Rutz, Dominik, et al. “Comparative Genomic Analysis of the Biotechnological Potential of the Novel Species Pseudomonas Wadenswilerensis CCOS 864T and Pseudomonas Reidholzensis CCOS 865T.” Diversity, vol. 2019, no. 11, 2019, p. 204, https://doi.org/10.3390/d11110204.