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dc.contributor.authorSchaper, Elke-
dc.contributor.authorAnisimova, Maria-
dc.date.accessioned2018-07-18T12:16:32Z-
dc.date.available2018-07-18T12:16:32Z-
dc.date.issued2014-
dc.identifier.issn1469-8137de_CH
dc.identifier.urihttps://digitalcollection.zhaw.ch/handle/11475/8295-
dc.description.abstractSequence tandem repeats (TRs) are abundant in proteomes across all domains of life. For plants, little is known about their distribution or contribution to protein function. We exhaustively annotated TRs and studied the evolution of TR unit variations for all Ensembl plants. Using phylogenetic patterns of TR units, we detected conserved TRs with unit number and order preserved during evolution, and those TRs that have diverged via recent TR unit gains/losses. We correlated the mode of evolution of TRs to protein function. TR number was strongly correlated with proteome size, with about one-half of all TRs recognized as common protein domains. The majority of TRs have been highly conserved over long evolutionary distances, some since the separation of red algae and green plants c. 1.6 billion yr ago. Conversely, recurrent recent TR unit mutations were rare. Our results suggest that the first TRs by far predate the first plants, and that TR appearance is an ongoing process with similar rates across the plant kingdom. Interestingly, the few detected highly mutable TRs might provide a source of variation for rapid adaptation. In particular, such TRs are enriched in leucine-rich repeats (LRRs) commonly found in R genes, where TR unit gain/loss may facilitate resistance to emerging pathogens.de_CH
dc.language.isoende_CH
dc.publisherWileyde_CH
dc.relation.ispartofNew Phytologistde_CH
dc.rightsLicence according to publishing contractde_CH
dc.subject.ddc580: Pflanzen (Botanik)de_CH
dc.titleThe evolution and function of protein tandem repeats in plantsde_CH
dc.typeBeitrag in wissenschaftlicher Zeitschriftde_CH
dcterms.typeTextde_CH
zhaw.departementLife Sciences und Facility Managementde_CH
zhaw.organisationalunitInstitut für Computational Life Sciences (ICLS)de_CH
dc.identifier.doi10.1111/nph.13184de_CH
zhaw.funding.euNode_CH
zhaw.issue1de_CH
zhaw.originated.zhawYesde_CH
zhaw.pages.end410de_CH
zhaw.pages.start397de_CH
zhaw.publication.statuspublishedVersionde_CH
zhaw.volume206de_CH
zhaw.publication.reviewPeer review (Publikation)de_CH
zhaw.funding.snf31003A_127325/1de_CH
zhaw.webfeedComputational Genomicsde_CH
Appears in collections:Publikationen Life Sciences und Facility Management

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Schaper, E., & Anisimova, M. (2014). The evolution and function of protein tandem repeats in plants. New Phytologist, 206(1), 397–410. https://doi.org/10.1111/nph.13184
Schaper, E. and Anisimova, M. (2014) ‘The evolution and function of protein tandem repeats in plants’, New Phytologist, 206(1), pp. 397–410. Available at: https://doi.org/10.1111/nph.13184.
E. Schaper and M. Anisimova, “The evolution and function of protein tandem repeats in plants,” New Phytologist, vol. 206, no. 1, pp. 397–410, 2014, doi: 10.1111/nph.13184.
SCHAPER, Elke und Maria ANISIMOVA, 2014. The evolution and function of protein tandem repeats in plants. New Phytologist. 2014. Bd. 206, Nr. 1, S. 397–410. DOI 10.1111/nph.13184
Schaper, Elke, and Maria Anisimova. 2014. “The Evolution and Function of Protein Tandem Repeats in Plants.” New Phytologist 206 (1): 397–410. https://doi.org/10.1111/nph.13184.
Schaper, Elke, and Maria Anisimova. “The Evolution and Function of Protein Tandem Repeats in Plants.” New Phytologist, vol. 206, no. 1, 2014, pp. 397–410, https://doi.org/10.1111/nph.13184.


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