Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree

Fernandes, Camila; Martins, Leonor; Teixeira, Miguel; Blom, Jochen; Pothier, Joël; Fonseca, Nuno A.; Tavares, Fernando

doi:10.3390/microorganisms9030624

Please use this identifier to cite or link to this item: https://doi.org/10.21256/zhaw-22169

Full metadata record

DC Field	Value	Language
dc.contributor.author	Fernandes, Camila	-
dc.contributor.author	Martins, Leonor	-
dc.contributor.author	Teixeira, Miguel	-
dc.contributor.author	Blom, Jochen	-
dc.contributor.author	Pothier, Joël	-
dc.contributor.author	Fonseca, Nuno A.	-
dc.contributor.author	Tavares, Fernando	-
dc.date.accessioned	2021-03-26T08:35:07Z	-
dc.date.available	2021-03-26T08:35:07Z	-
dc.date.issued	2021-03-17	-
dc.identifier.issn	2076-2607	de_CH
dc.identifier.uri	https://digitalcollection.zhaw.ch/handle/11475/22169	-
dc.description.abstract	The recent report of distinct Xanthomonas lineages of Xanthomonas arboricola pv. juglandis and Xanthomonas euroxanthea within the same walnut tree revealed that this consortium of walnut-associated Xanthomonas includes both pathogenic and nonpathogenic strains. As the implications of this co-colonization are still poorly understood, in order to unveil niche-specific adaptations, the genomes of three X. euroxanthea strains (CPBF 367, CPBF 424T, and CPBF 426) and of an X. arboricola pv. juglandis strain (CPBF 427) isolated from a single walnut tree in Loures (Portugal) were sequenced with two different technologies, Illumina and Nanopore, to provide consistent single scaffold chromosomal sequences. General genomic features showed that CPBF 427 has a genome similar to other X. arboricola pv. juglandis strains, regarding its size, number, and content of CDSs, while X. euroxanthea strains show a reduction regarding these features comparatively to X. arboricola pv. juglandis strains. Whole genome comparisons revealed remarkable genomic differences between X. arboricola pv. juglandis and X. euroxanthea strains, which translates into different pathogenicity and virulence features, namely regarding type 3 secretion system and its effectors and other secretory systems, chemotaxis-related proteins, and extracellular enzymes. Altogether, the distinct genomic repertoire of X. euroxanthea may be particularly useful to address pathogenicity emergence and evolution in walnut-associated Xanthomonas.	de_CH
dc.language.iso	en	de_CH
dc.publisher	MDPI	de_CH
dc.relation.ispartof	Microorganisms	de_CH
dc.rights	http://creativecommons.org/licenses/by/4.0/	de_CH
dc.subject	Walnut bacterial blight	de_CH
dc.subject	Comparative genomics	de_CH
dc.subject	Xanthomonas arboricola pv. juglandis	de_CH
dc.subject	Xanthomonas euroxanthea	de_CH
dc.subject	Pathogenicity	de_CH
dc.subject.ddc	572: Biochemie	de_CH
dc.subject.ddc	579: Mikrobiologie	de_CH
dc.title	Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree	de_CH
dc.type	Beitrag in wissenschaftlicher Zeitschrift	de_CH
dcterms.type	Text	de_CH
zhaw.departement	Life Sciences und Facility Management	de_CH
zhaw.organisationalunit	Institut für Umwelt und Natürliche Ressourcen (IUNR)	de_CH
dc.identifier.doi	10.3390/microorganisms9030624	de_CH
dc.identifier.doi	10.21256/zhaw-22169	-
zhaw.funding.eu	No	de_CH
zhaw.issue	3	de_CH
zhaw.originated.zhaw	Yes	de_CH
zhaw.pages.start	624	de_CH
zhaw.publication.status	publishedVersion	de_CH
zhaw.volume	9	de_CH
zhaw.publication.review	Peer review (Publikation)	de_CH
zhaw.webfeed	Umweltgenomik	de_CH
zhaw.funding.zhaw	Xhortomics: Entwicklung von diagnostischen und epidemiologischen Hilfsmitteln für die Xanthomonas hortorum Spezies Gruppe basierend auf OMICs Technologien	de_CH
zhaw.funding.zhaw	Comparative genomics of the plant pathogen Xanthomonas arboricola pv. pruni and related xanthomonads	de_CH
zhaw.author.additional	No	de_CH
zhaw.display.portrait	Yes	de_CH
Appears in collections:	Publikationen Life Sciences und Facility Management

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Supplementar material_proof.pdf	Supplementary Material	7.17 MB	Adobe PDF	View/Open
Table S2_Fernandes et al, 2021 MDPI_proof.xlsx	Supplementary Table S2	22.39 kB	Microsoft Excel XML	View/Open
Table S3_ Best BLAST hit results putative homologs_proof.tsv	Supplementary Table S3	436.04 kB	Unknown	View/Open
2021_Fernandes_Comparative_Genomics_Microorganisms.pdf	Main Text	1.47 MB	Adobe PDF	View/Open

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Fernandes, C., Martins, L., Teixeira, M., Blom, J., Pothier, J., Fonseca, N. A., & Tavares, F. (2021). Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree. Microorganisms, 9(3), 624. https://doi.org/10.3390/microorganisms9030624

Fernandes, C. et al. (2021) ‘Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree’, Microorganisms, 9(3), p. 624. Available at: https://doi.org/10.3390/microorganisms9030624.

C. Fernandes et al., “Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree,” Microorganisms, vol. 9, no. 3, p. 624, Mar. 2021, doi: 10.3390/microorganisms9030624.

FERNANDES, Camila, Leonor MARTINS, Miguel TEIXEIRA, Jochen BLOM, Joël POTHIER, Nuno A. FONSECA und Fernando TAVARES, 2021. Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree. Microorganisms. 17 März 2021. Bd. 9, Nr. 3, S. 624. DOI 10.3390/microorganisms9030624

Fernandes, Camila, Leonor Martins, Miguel Teixeira, Jochen Blom, Joël Pothier, Nuno A. Fonseca, and Fernando Tavares. 2021. “Comparative Genomics of Xanthomonas Euroxanthea and Xanthomonas Arboricola Pv. Juglandis Strains Isolated from a Single Walnut Host Tree.” Microorganisms 9 (3): 624. https://doi.org/10.3390/microorganisms9030624.

Fernandes, Camila, et al. “Comparative Genomics of Xanthomonas Euroxanthea and Xanthomonas Arboricola Pv. Juglandis Strains Isolated from a Single Walnut Host Tree.” Microorganisms, vol. 9, no. 3, Mar. 2021, p. 624, https://doi.org/10.3390/microorganisms9030624.