Please use this identifier to cite or link to this item:
https://doi.org/10.21256/zhaw-22764Full metadata record
| DC Field | Value | Language |
|---|---|---|
| dc.contributor.author | Delucchi, Matteo | - |
| dc.contributor.author | Näf, Paulina | - |
| dc.contributor.author | Bliven, Spencer | - |
| dc.contributor.author | Anisimova, Maria | - |
| dc.date.accessioned | 2021-07-01T10:42:42Z | - |
| dc.date.available | 2021-07-01T10:42:42Z | - |
| dc.date.issued | 2021-06-25 | - |
| dc.identifier.issn | 2673-7647 | de_CH |
| dc.identifier.uri | https://digitalcollection.zhaw.ch/handle/11475/22764 | - |
| dc.description.abstract | The Tandem Repeat Annotation Library (TRAL) focuses on analyzing tandem repeat units in genomic sequences. TRAL can integrate and harmonize tandem repeat annotations from a large number of external tools, and provides a statistical model for evaluating and filtering the detected repeats. TRAL version 2.0 includes new features such as a module for identifying repeats from circular profile hidden Markov models, a new repeat alignment method based on the progressive Poisson Indel Process, an improved installation procedure and a docker container. TRAL is an open-source Python 3 library and is available, together with documentation and tutorials viavital-it.ch/software/tral. | de_CH |
| dc.language.iso | en | de_CH |
| dc.publisher | Frontiers Research Foundation | de_CH |
| dc.relation.ispartof | Frontiers in Bioinformatics | de_CH |
| dc.rights | http://creativecommons.org/licenses/by/4.0/ | de_CH |
| dc.subject | Bioinformatics | de_CH |
| dc.subject | Profile hidden markov models | de_CH |
| dc.subject | Computational biology | de_CH |
| dc.subject | Genome annotation | de_CH |
| dc.subject | Protein sequence analysis | de_CH |
| dc.subject | Tandem repeats | de_CH |
| dc.subject.ddc | 004: Informatik | de_CH |
| dc.subject.ddc | 572: Biochemie | de_CH |
| dc.title | TRAL 2.0 : tandem repeat detection with circular profile hidden Markov models and evolutionary aligner | de_CH |
| dc.type | Beitrag in wissenschaftlicher Zeitschrift | de_CH |
| dcterms.type | Text | de_CH |
| zhaw.departement | Life Sciences und Facility Management | de_CH |
| zhaw.organisationalunit | Institut für Computational Life Sciences (ICLS) | de_CH |
| dc.identifier.doi | 10.3389/fbinf.2021.691865 | de_CH |
| dc.identifier.doi | 10.21256/zhaw-22764 | - |
| zhaw.funding.eu | info:eu-repo/grantAgreement/EC/H2020/823886//Repeat protein Function Refinement, Annotation and Classification of Topologies/REFRACT | de_CH |
| zhaw.issue | 691865 | de_CH |
| zhaw.originated.zhaw | Yes | de_CH |
| zhaw.publication.status | publishedVersion | de_CH |
| zhaw.volume | 1 | de_CH |
| zhaw.publication.review | Peer review (Publikation) | de_CH |
| zhaw.funding.snf | 176316, 193832 | de_CH |
| zhaw.webfeed | Computational Genomics | de_CH |
| zhaw.webfeed | Medical Image Analysis & Data Modeling | de_CH |
| zhaw.funding.zhaw | REFRACT – Repeat protein Function, Refinement, Annotation and Classification of Topologies | de_CH |
| zhaw.funding.zhaw | Trans-omic approach to colorectal cancer: an integrative computational and clinical perspective | de_CH |
| zhaw.funding.zhaw | Frequentist estimation of the evolutionary history of sequences with substitutions and indels | de_CH |
| zhaw.author.additional | No | de_CH |
| zhaw.display.portrait | Yes | de_CH |
| Appears in collections: | Publikationen Life Sciences und Facility Management | |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| 2021_Delucchi-etal_Tandem-repeat-detection.pdf | 2.15 MB | Adobe PDF |  View/Open |
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Delucchi, M., Näf, P., Bliven, S., & Anisimova, M. (2021). TRAL 2.0 : tandem repeat detection with circular profile hidden Markov models and evolutionary aligner. Frontiers in Bioinformatics, 1(691865). https://doi.org/10.3389/fbinf.2021.691865
Delucchi, M. et al. (2021) ‘TRAL 2.0 : tandem repeat detection with circular profile hidden Markov models and evolutionary aligner’, Frontiers in Bioinformatics, 1(691865). Available at: https://doi.org/10.3389/fbinf.2021.691865.
M. Delucchi, P. Näf, S. Bliven, and M. Anisimova, “TRAL 2.0 : tandem repeat detection with circular profile hidden Markov models and evolutionary aligner,” Frontiers in Bioinformatics, vol. 1, no. 691865, Jun. 2021, doi: 10.3389/fbinf.2021.691865.
DELUCCHI, Matteo, Paulina NÄF, Spencer BLIVEN und Maria ANISIMOVA, 2021. TRAL 2.0 : tandem repeat detection with circular profile hidden Markov models and evolutionary aligner. Frontiers in Bioinformatics. 25 Juni 2021. Bd. 1, Nr. 691865. DOI 10.3389/fbinf.2021.691865
Delucchi, Matteo, Paulina Näf, Spencer Bliven, and Maria Anisimova. 2021. “TRAL 2.0 : Tandem Repeat Detection with Circular Profile Hidden Markov Models and Evolutionary Aligner.” Frontiers in Bioinformatics 1 (691865). https://doi.org/10.3389/fbinf.2021.691865.
Delucchi, Matteo, et al. “TRAL 2.0 : Tandem Repeat Detection with Circular Profile Hidden Markov Models and Evolutionary Aligner.” Frontiers in Bioinformatics, vol. 1, no. 691865, June 2021, https://doi.org/10.3389/fbinf.2021.691865.
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