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Please use this identifier to cite or link to this item: https://doi.org/10.21256/zhaw-24450
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dc.contributor.authorSmits, Theo H. M.-
dc.contributor.authorArend, Lavinia N. V. S.-
dc.contributor.authorCardew, Sofia-
dc.contributor.authorTång-Hallbäck, Erika-
dc.contributor.authorMira, Marcelo T.-
dc.contributor.authorMoore, Edward R. B.-
dc.contributor.authorSampaio, Jorge L. M.-
dc.contributor.authorRezzonico, Fabio-
dc.contributor.authorPillonetto, Marcelo-
dc.date.accessioned2022-03-02T14:57:19Z-
dc.date.available2022-03-02T14:57:19Z-
dc.date.issued2022-02-15-
dc.identifier.issn0934-9723de_CH
dc.identifier.issn1435-4373de_CH
dc.identifier.urihttps://digitalcollection.zhaw.ch/handle/11475/24450-
dc.description.abstractAlthough many clinically significant strains belonging to the family Enterobacteriaceae fall into a restricted number of genera and species, there is still a substantial number of isolates that elude this classification and for which proper identification remains challenging. With the current improvements in the field of genomics, it is not only possible to generate high-quality data to accurately identify individual nosocomial isolates at the species level and understand their pathogenic potential but also to analyse retrospectively the genome sequence databases to identify past recurrences of a specific organism, particularly those originally published under an incorrect or outdated taxonomy. We propose a general use of this approach to classify further clinically relevant taxa, i.e., Phytobacter spp., that have so far gone unrecognised due to unsatisfactory identification procedures in clinical diagnostics. Here, we present a genomics and literature-based approach to establish the importance of the genus Phytobacter as a clinically relevant member of the Enterobacteriaceae family.de_CH
dc.language.isoende_CH
dc.publisherSpringerde_CH
dc.relation.ispartofEuropean Journal of Clinical Microbiology & Infectious Diseasesde_CH
dc.rightshttp://creativecommons.org/licenses/by/4.0/de_CH
dc.subjectPhytobacter diazotrophicusde_CH
dc.subjectPhytobacter ursingiide_CH
dc.subjectPhytobacter palmaede_CH
dc.subjectGenomicsde_CH
dc.subjectIdentificationde_CH
dc.subjectTaxonomyde_CH
dc.subject.ddc579: Mikrobiologiede_CH
dc.titleResolving taxonomic confusion : establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceaede_CH
dc.typeBeitrag in wissenschaftlicher Zeitschriftde_CH
dcterms.typeTextde_CH
zhaw.departementLife Sciences und Facility Managementde_CH
zhaw.organisationalunitInstitut für Umwelt und Natürliche Ressourcen (IUNR)de_CH
dc.identifier.doi10.1007/s10096-022-04413-8de_CH
dc.identifier.doi10.21256/zhaw-24450-
zhaw.funding.euNode_CH
zhaw.issue4de_CH
zhaw.originated.zhawYesde_CH
zhaw.pages.end558de_CH
zhaw.pages.start547de_CH
zhaw.publication.statuspublishedVersionde_CH
zhaw.volume41de_CH
zhaw.publication.reviewPeer review (Publikation)de_CH
zhaw.webfeedHealth Research Hub (LSFM)de_CH
zhaw.webfeedUmweltgenomikde_CH
zhaw.funding.zhawSepsis-Associated Microorganisms in Brazilian Ambulatories (SAMBA)de_CH
zhaw.funding.zhawAntibiotic resistances in Enterobacteriade_CH
zhaw.author.additionalNode_CH
zhaw.display.portraitYesde_CH
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Smits, T. H. M., Arend, L. N. V. S., Cardew, S., Tång-Hallbäck, E., Mira, M. T., Moore, E. R. B., Sampaio, J. L. M., Rezzonico, F., & Pillonetto, M. (2022). Resolving taxonomic confusion : establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae. European Journal of Clinical Microbiology & Infectious Diseases, 41(4), 547–558. https://doi.org/10.1007/s10096-022-04413-8
Smits, T.H.M. et al. (2022) ‘Resolving taxonomic confusion : establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae’, European Journal of Clinical Microbiology & Infectious Diseases, 41(4), pp. 547–558. Available at: https://doi.org/10.1007/s10096-022-04413-8.
T. H. M. Smits et al., “Resolving taxonomic confusion : establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae,” European Journal of Clinical Microbiology & Infectious Diseases, vol. 41, no. 4, pp. 547–558, Feb. 2022, doi: 10.1007/s10096-022-04413-8.
SMITS, Theo H. M., Lavinia N. V. S. AREND, Sofia CARDEW, Erika TÅNG-HALLBÄCK, Marcelo T. MIRA, Edward R. B. MOORE, Jorge L. M. SAMPAIO, Fabio REZZONICO und Marcelo PILLONETTO, 2022. Resolving taxonomic confusion : establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae. European Journal of Clinical Microbiology & Infectious Diseases. 15 Februar 2022. Bd. 41, Nr. 4, S. 547–558. DOI 10.1007/s10096-022-04413-8
Smits, Theo H. M., Lavinia N. V. S. Arend, Sofia Cardew, Erika Tång-Hallbäck, Marcelo T. Mira, Edward R. B. Moore, Jorge L. M. Sampaio, Fabio Rezzonico, and Marcelo Pillonetto. 2022. “Resolving Taxonomic Confusion : Establishing the Genus Phytobacter on the List of Clinically Relevant Enterobacteriaceae.” European Journal of Clinical Microbiology & Infectious Diseases 41 (4): 547–58. https://doi.org/10.1007/s10096-022-04413-8.
Smits, Theo H. M., et al. “Resolving Taxonomic Confusion : Establishing the Genus Phytobacter on the List of Clinically Relevant Enterobacteriaceae.” European Journal of Clinical Microbiology & Infectious Diseases, vol. 41, no. 4, Feb. 2022, pp. 547–58, https://doi.org/10.1007/s10096-022-04413-8.


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