Host-pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-seq analysis

Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F.

Publication type:	Research data
Title:	Host-pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-seq analysis
Authors:	Gétaz, Michael Puławska, Joanna Smits, Theo H.M. Pothier, Joël F.
et. al:	No
Issue Date:	25-Aug-2020
Publisher / Ed. Institution:	Gene Expression Omnibus
Language:	English
Subject (DDC):	572: Biochemistry
Abstract:	Strawberry is economically important and widely grown but susceptible to a large variety of phytopathogenic organisms. Among them, Xanthomonas fragariae is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, gene expression of both plant and bacteria in planta was analyzed at two time points, 12- and 29-days post inoculation, in order to compare pathogen and host response between the stages of early visible and of well-developed symptoms. Among 28’588 known genes in strawberry and 4’046 known genes in X. fragariae expressed at both time points, a total of 361 plant and 144 bacterial genes were significantly differentially expressed, respectively. The identified higher expressed genes in the plants were pathogen-associated molecular pattern receptors and pathogenesis related thaumatin encoding genes, whereas the more expressed early genes were related to chloroplast metabolism as well as photosynthesis related coding genes. Most of X. fragariae genes involved in host interactions, recognitions and pathogenesis, were lower expressed at late-phase infection. This study gives a first insight on the interaction of X. fragariae with its host. The strawberry plant changed its metabolism consistently with the progression of infection.
URI:	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636 https://digitalcollection.zhaw.ch/handle/11475/26246
Related publications:	https://doi.org/10.3390/microorganisms8081253
License (according to publishing contract):	Licence according to publishing contract
Departement:	Life Sciences and Facility Management
Organisational Unit:	Institute of Natural Resource Sciences (IUNR)
Published as part of the ZHAW project:	DROPSA – Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens
Appears in collections:	ZHAW Forschungsdaten Life Sciences and Facility Management

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Gétaz, M., Puławska, J., Smits, T. H. M., & Pothier, J. F. (2020). Host-pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-seq analysis [Data set]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636

Gétaz, M. et al. (2020) ‘Host-pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-seq analysis’. Gene Expression Omnibus. Available at: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636.

M. Gétaz, J. Puławska, T. H. M. Smits, and J. F. Pothier, “Host-pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-seq analysis.” Gene Expression Omnibus, Aug. 25, 2020. [Online]. Available: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636

GÉTAZ, Michael, Joanna PUŁAWSKA, Theo H.M. SMITS und Joël F. POTHIER, 2020. Host-pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-seq analysis [online]. Data set. 25 August 2020. Gene Expression Omnibus. Verfügbar unter: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636

Gétaz, Michael, Joanna Puławska, Theo H.M. Smits, and Joël F. Pothier. 2020. “Host-Pathogen Interactions between Xanthomonas Fragariae and Its Host Fragaria × Ananassa Investigated with a Dual RNA-Seq Analysis.” Data set. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636.

Gétaz, Michael, et al. Host-Pathogen Interactions between Xanthomonas Fragariae and Its Host Fragaria × Ananassa Investigated with a Dual RNA-Seq Analysis. Gene Expression Omnibus, 25 Aug. 2020, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636.