Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno

Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; Frigaard, Niels-Ulrik; Wittwer, Matthias; Tonolla, Mauro

doi:10.21256/zhaw-2008

Please use this identifier to cite or link to this item: https://doi.org/10.21256/zhaw-2008

Full metadata record

DC Field	Value	Language
dc.contributor.author	Luedin, Samuel M.	-
dc.contributor.author	Pothier, Joël F.	-
dc.contributor.author	Danza, Francesco	-
dc.contributor.author	Storelli, Nicola	-
dc.contributor.author	Frigaard, Niels-Ulrik	-
dc.contributor.author	Wittwer, Matthias	-
dc.contributor.author	Tonolla, Mauro	-
dc.date.accessioned	2018-06-18T08:07:26Z	-
dc.date.available	2018-06-18T08:07:26Z	-
dc.date.issued	2018	-
dc.identifier.issn	1944-3277	de_CH
dc.identifier.uri	https://digitalcollection.zhaw.ch/handle/11475/6991	-
dc.description.abstract	"Thiodictyon syntrophicum" sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.	de_CH
dc.language.iso	en	de_CH
dc.publisher	BioMed Central	de_CH
dc.relation.ispartof	Standards in Genomic Sciences	de_CH
dc.rights	http://creativecommons.org/licenses/by/4.0/	de_CH
dc.subject	CRISPR	de_CH
dc.subject	Chromatiaceae	de_CH
dc.subject	Meromictic lake	de_CH
dc.subject	Okenone	de_CH
dc.subject	Phototrophic sulfur bacteria	de_CH
dc.subject	Sulfur cycling	de_CH
dc.subject.ddc	572: Biochemie	de_CH
dc.title	Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno	de_CH
dc.type	Beitrag in wissenschaftlicher Zeitschrift	de_CH
dcterms.type	Text	de_CH
zhaw.departement	Life Sciences und Facility Management	de_CH
zhaw.organisationalunit	Institut für Umwelt und Natürliche Ressourcen (IUNR)	de_CH
dc.identifier.doi	10.21256/zhaw-2008	-
dc.identifier.doi	10.1186/s40793-018-0317-z	de_CH
dc.identifier.pmid	29774086	de_CH
zhaw.funding.eu	No	de_CH
zhaw.issue	14	de_CH
zhaw.originated.zhaw	Yes	de_CH
zhaw.publication.status	publishedVersion	de_CH
zhaw.volume	13	de_CH
zhaw.publication.review	Peer review (Publikation)	de_CH
zhaw.webfeed	Umweltgenomik	de_CH
zhaw.funding.zhaw	High-throughput proteomics of Thiodictyon synthrophicum strain Cad16T	de_CH
Appears in collections:	Publikationen Life Sciences und Facility Management

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Luedin, S. M., Pothier, J. F., Danza, F., Storelli, N., Frigaard, N.-U., Wittwer, M., & Tonolla, M. (2018). Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences, 13(14). https://doi.org/10.21256/zhaw-2008

Luedin, S.M. et al. (2018) ‘Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno’, Standards in Genomic Sciences, 13(14). Available at: https://doi.org/10.21256/zhaw-2008.

S. M. Luedin et al., “Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno,” Standards in Genomic Sciences, vol. 13, no. 14, 2018, doi: 10.21256/zhaw-2008.

LUEDIN, Samuel M., Joël F. POTHIER, Francesco DANZA, Nicola STORELLI, Niels-Ulrik FRIGAARD, Matthias WITTWER und Mauro TONOLLA, 2018. Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences. 2018. Bd. 13, Nr. 14. DOI 10.21256/zhaw-2008

Luedin, Samuel M., Joël F. Pothier, Francesco Danza, Nicola Storelli, Niels-Ulrik Frigaard, Matthias Wittwer, and Mauro Tonolla. 2018. “Complete Genome Sequence of “Thiodictyon Syntrophicum” Sp. Nov. Strain Cad16T, a Photolithoautotrophic Purple Sulfur Bacterium Isolated from the Alpine Meromictic Lake Cadagno.” Standards in Genomic Sciences 13 (14). https://doi.org/10.21256/zhaw-2008.

Luedin, Samuel M., et al. “Complete Genome Sequence of “Thiodictyon Syntrophicum” Sp. Nov. Strain Cad16T, a Photolithoautotrophic Purple Sulfur Bacterium Isolated from the Alpine Meromictic Lake Cadagno.” Standards in Genomic Sciences, vol. 13, no. 14, 2018, https://doi.org/10.21256/zhaw-2008.